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Science Kit carries a wide variety of chemistry models for classrooms.
sciencekit.com
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Provider of molecular modeling resources, including labeled diagrams with explanations representing the important processes of biotechnology.
www.accessexcellence.org
Provider of interactive molecular modeling resources that allow structure drawing and analysis.
www.acdlabs.com
Manufacturer of perfume ingredients and active aromatics, including methyl and ethyl maltol and dihydroxy methyl malonic acid. Also provides two-dimensional molecular illustration of compounds.
www.aokeda.com
Provider of molecular modeling resources in real time.
kinemage.biochem.duke.edu
Searchable database of heterocompounds encountered in files from the Protein Data Bank (PDB).
alpha2.bmc.uu.se
Provider of molecular modeling resources, including searchable databases, software, publications and seminars.
www.bmm.icnet.uk
Provider of molecular structure prediction modeling resources.
www.bmm.icnet.uk
Provider of molecular modeling resources and a searchable database for three-dimensional rendered molecules.
www.chem.com
Provider of molecular modeling resources and a searchable database.
www.chem.ox.ac.uk
Molecular struture database for amino compounds rendered in three-dimension.
www.chemie.fu-berlin.de
Provider of molecular modeling resources for thermotropic liquid crystals.
liqcryst.chemie.uni-hamburg.de
Provider of molecular modeling resources and a searchable database.
www.clunet.edu
Provider of molecular modeling resources and a searchable database for three-dimensional and two-dimensional structures.
www.cmbi.kun.nl
Provider of molecular modeling resources and quantum values.
www.colby.edu
Provider of molecular modeling resources and software.
www.crystal.chem.uu.nl
Generator of computational tools that construct chemical structural formulas within a collection of chemical and physical constraints.
www.cs.sandia.gov
Provider of three-dimensional chemical structures using specific constraints such as structural constraints, geometric constraints, energetic constraints and kinetics constraints.
www.cs.sandia.gov
Provider of fluorosurfactant chemical structures manufactured by Dupont.
www.dupont.com
Provider of computer-based chemical resources including molecular modeling, pedagogical PDBs, structure of vitamin A and vitamin B1 and other related links.
chemistry.gsu.edu
Provider of molecular modeling resources and scientific visualization models.
www.knowledgebydesign.com
Provider of molecular modeling resources for displaying, animating and analyzing large biomolecular systems using three-dimensional graphics.
www.ks.uiuc.edu
Provider of molecular visualization tools for academia and research.
www.molvent.com
Searchable database of atoms, molecules, atomic orbitals and visualization tools.
chemviz.ncsa.uiuc.edu
Provider of molecular modeling resources, mainly basic crystal lattices.
cst-www.nrl.navy.mil
Provider of molecular modeling resources and searchable database of proteins structures.
laguerre.psc.edu
Searchable database of 3-D protein structures. Also provides comparison tools.
cl.sdsc.edu
Provider of molecular modeling resources and searchable databases.
molvis.sdsc.edu
Provider of 3D molecualr visualization tools.
www.soils.wisc.edu
Searchable database of structural information for proteins in the yeast genome.
genome-www.stanford.edu
Provider of 3D structure visualization tools for proteins.
www.umass.edu
Provider of 3D structure illustrations of dendrimers, proteins, nanotechnology, ceramics and quantum models also provides related simulations.
www.wag.caltech.edu
Provider of online molecular 3D models of various chemical compounds.
www.wellesley.edu
Developer of spectral data processor software and a series of digital spectral database systems including molecular structure 3D modeling.
www.xpsdata.com
Develop Visually, Collaborate With Hundreds of Colleagues
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Molecular models allow you to visualize chemical structures. Textbooks only provide 2D visualizations of molecular structure; 3D molecular modeling can be accomplished using molecular modeling kits or digital molecular models. Kits are good for teaching and presentations, while computer-based molecular models offer advanced modeling capability. Molecular modeling software packages allow you to perform complex calculations and manipulate molecules in 3D virtual space. Using a molecular model, researchers are able to iteratively design medicinal drugs. 3D molecular modeling software will help scientists to develop drugs for treating a range of diseases including AIDS, cancer and arthritis.
Molecular modeling is a growing field, and more resources are available to consumers. Whether you are interested in molecular modeling kits or computer-based molecular models, the Internet provides several options from which to choose.
Use the following recommendations to find the molecular modeling tools you need:
1. Molecular modeling kits provide hands-on visualization tools.
2. Free software provides a way of creating basic molecular models.
3. Professional molecular modeling software offers advanced modeling functionality.
Action Steps
The best contacts and resources to help you get it done
Use molecular modeling kits for hands-on modeling exercises
Molecular models provide a solid physical representation of atomic structure. Use these to create solid molecular structures. These models are excellent for teaching chemistry.
I recommend: Indigo Instruments has a variety of molecular modeling kits for sale. From carbon allotropes to molecular biology and crystal lattices, this dealer can help you with your modeling needs. Molecular Visions offers several modeling kits, including those for specialized molecular modeling. This company also offers parts for your models.
Download free 3D molecular modeling software
Multiple free molecular modeling software packages are available online. These packages provide you with the tools you need for creating basic molecular models.
I recommend: Planaria Software offers a free 3D molecular modeling software package, ArgusLab. Download this software package from the company's website. Accelrys' Discovery Studio Visualizer 2.0 provides commercial grade graphics visualization for free. Complete a brief survey to request your copy.
Purchase professional software for advanced molecular modeling
If you need a wider range of options in your molecular modeling software, consider purchasing a professional package. Several companies offer demos or trial periods that allow you to see the software in action.
I recommend: ChemSW provides a range of licensing options for its Molecular Modeling Pro software. This program is the result of 20 years of development. Download a demo to see if it is right for you. Hypercube's HyperChem is a sophisticated, yet easy-to-use 3D molecular modeling software package. Download a 10-day trial license to try it out.
Tips & Tactics
Helpful advice for making the most of this Guide
- • Many university chemistry departments have developed molecular modeling software. These packages offer a range of functionality, but are usually free. While many of these programs may be simple, they can help you to get started with digital molecular modeling.


