Genomics Workstation
The Zephyr Genomics Workstation Robust & Simple Soln for DNA & RNA
www.caliperls.com/zephyr_gw
The Zephyr Genomics Workstation Robust & Simple Soln for DNA & RNA
www.caliperls.com/zephyr_gw
Scholarships Available
MS binformatics program (9 months) Georgetown Med Sch Washington DC
Bmcb.Georgetown.Edu/Bioinformatics
MS binformatics program (9 months) Georgetown Med Sch Washington DC
Bmcb.Georgetown.Edu/Bioinformatics
Bioinformatics Software
MassSpectrometry | NextGenSeq StructurePrediction | HomlogySearch
www.BioinformaticsSolutions.com
MassSpectrometry | NextGenSeq StructurePrediction | HomlogySearch
www.BioinformaticsSolutions.com
Learn Biology in 24 Hours
Master Biology Visually and Rapidly Breakthrough Rapid Learning System.
RapidLearningCenter.com/biology
Master Biology Visually and Rapidly Breakthrough Rapid Learning System.
RapidLearningCenter.com/biology
Bioinformatics Schools
Search Directory of leading Computational Biology Degrees
GuideToHealthcareSchools.com
Search Directory of leading Computational Biology Degrees
GuideToHealthcareSchools.com
Bioinformatics Software
Analyze proteomic data in minutes Demo software today!
www.ProteinForest.com
Analyze proteomic data in minutes Demo software today!
www.ProteinForest.com
Download
Download the New, Optimized Version of Internet Explorer® for Free Now!
www.IE8optimized.com
Download the New, Optimized Version of Internet Explorer® for Free Now!
www.IE8optimized.com
Related Business Topics
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2Dgels
Compugen's software package for 2D gel image analysis. Z3 automates spot detection and registration alignment of images to match the spots. It computes differential expression with a proprietary method that improves the accuracy of analysis resu...
www.2dgels.com
Compugen's software package for 2D gel image analysis. Z3 automates spot detection and registration alignment of images to match the spots. It computes differential expression with a proprietary method that improves the accuracy of analysis resu...
www.2dgels.com
A
ApoCom, Inc.
Developer of BioInformatics(tm), a software package that provides a range of analysis for database search systems. The software is used mainly for genetic research and runs on UNIX, Windows NT and 95. Products and services are sold to the phar...
www.apocom.com
Developer of BioInformatics(tm), a software package that provides a range of analysis for database search systems. The software is used mainly for genetic research and runs on UNIX, Windows NT and 95. Products and services are sold to the phar...
www.apocom.com
Array Genetics, Inc.
Specializing in bioinformatics software design and developing software solutions for academic, government and industrial scientists.
www.arraygenetics.com
Specializing in bioinformatics software design and developing software solutions for academic, government and industrial scientists.
www.arraygenetics.com
B
Developmental Biology Center
The Developmental Biology Center (DBC) is an Organized Research unit providing focus and support for research in developmental biology in several departments of the School of Biological Sciences and the College of Medicine.
mamba.bio.uci.edu
The Developmental Biology Center (DBC) is an Organized Research unit providing focus and support for research in developmental biology in several departments of the School of Biological Sciences and the College of Medicine.
mamba.bio.uci.edu
Amita
Designs databases and builds software for harvesting genomic and proteomic data. Creates web-based databases for sharing research information and provides project management.
www.biodatabases.com
Designs databases and builds software for harvesting genomic and proteomic data. Creates web-based databases for sharing research information and provides project management.
www.biodatabases.com
Biodatabase Mining
Provider of database development, data mining and project management services for the genomic research community.
biodatabases.com
Provider of database development, data mining and project management services for the genomic research community.
biodatabases.com
Bio Tools
Offers primary bioinformatics products for protein sequence analysis and chromatogram analysis.
www.biotools.com
Offers primary bioinformatics products for protein sequence analysis and chromatogram analysis.
www.biotools.com
BioMolecular Engineering Research Center
Research center focusing on statistical and other computational approaches which will detect syntactic and semantic patterns in DNA, RNA, and protein sequences.
bmerc-www.bu.edu
Research center focusing on statistical and other computational approaches which will detect syntactic and semantic patterns in DNA, RNA, and protein sequences.
bmerc-www.bu.edu
C
Caesar Software, LLC
Developer of bioinformatic software and laboratory management databases.
www.caesarsoftware.com
Developer of bioinformatic software and laboratory management databases.
www.caesarsoftware.com
Transcription Element Search Software
Online searchable database with multiple query functions.
www.cbil.upenn.edu
Online searchable database with multiple query functions.
www.cbil.upenn.edu
Center Structural Biology
Programs and tools from the Department of Molecular Biophysics and Biochemistry at Yale University.
www.csb.yale.edu
Programs and tools from the Department of Molecular Biophysics and Biochemistry at Yale University.
www.csb.yale.edu
E
Ensembl Project
A joint project between EMBL-EBI and the Sanger Centre to develop a software system which produces and maintains automatic annotation on eukaryotic genomes.
www.ensembl.org
A joint project between EMBL-EBI and the Sanger Centre to develop a software system which produces and maintains automatic annotation on eukaryotic genomes.
www.ensembl.org
Melanie II 2-D Analysis Software
Software for analyzing, annotating and querying your 2D gel samples.
www.expasy.ch
Software for analyzing, annotating and querying your 2D gel samples.
www.expasy.ch
G
Irish National Centre for BioInformatics
Bioinformatics services and information for molecular biologists.
acer.gen.tcd.ie
Bioinformatics services and information for molecular biologists.
acer.gen.tcd.ie
Genamics
A software and web development firm dedicated to empowering researchers with modern and innovative solutions.
www.genamics.com
A software and web development firm dedicated to empowering researchers with modern and innovative solutions.
www.genamics.com
Geneva Bioinformatics (GeneBio) S.A.
Providing databases, software tools and services to the Life Science industry particularly in the field of proteomics.
www.genebio.com
Providing databases, software tools and services to the Life Science industry particularly in the field of proteomics.
www.genebio.com
GenomeNet
A Japanese network of database and computational services for genome research and related research areas in molecular and cellular biology.
www.genome.ad.jp
A Japanese network of database and computational services for genome research and related research areas in molecular and cellular biology.
www.genome.ad.jp
Bioinformatics Consulting
Bioinformatics software specializing in high throughput data analysis.
www.geospiza.com
Bioinformatics software specializing in high throughput data analysis.
www.geospiza.com
I
Swiss Institute of Bioinformatics (SIB)
Mission is to offer state-of-the-art research, education and services in the field of bioinformatics in Switzerland with international collaborations.
www.isb-sib.ch
Mission is to offer state-of-the-art research, education and services in the field of bioinformatics in Switzerland with international collaborations.
www.isb-sib.ch
Bioinformatics WWW-Server
the WWW-Server of the Bioinformatics Group of the ISREC (Swiss Institute for Experimental Cancer Research), a founding member of the SIB (Swiss Institute for Bioinformatics).
www.isrec.isb-sib.ch
the WWW-Server of the Bioinformatics Group of the ISREC (Swiss Institute for Experimental Cancer Research), a founding member of the SIB (Swiss Institute for Bioinformatics).
www.isrec.isb-sib.ch
L
LabBook.com
Provides eXtensible Markup Language (XML)powered Internet solutions and life science applications for the researcher to access, data mine, integrate, store, and visualize biomedical information.
www.labbook.com
Provides eXtensible Markup Language (XML)powered Internet solutions and life science applications for the researcher to access, data mine, integrate, store, and visualize biomedical information.
www.labbook.com
M
Matrix Science
Develops and markets software products which integrate mass spectrometry into bioinformatics.
www.matrixscience.com
Develops and markets software products which integrate mass spectrometry into bioinformatics.
www.matrixscience.com
Molecular Evolutionary Genetics Analysis (MEGA2) software
Program providing methods of comparative sequence analysis for easy access for the scientific community for research and education.
megasoftware.net
Program providing methods of comparative sequence analysis for easy access for the scientific community for research and education.
megasoftware.net
N
Neomorphic Software, Inc.
Mining the human genome to identify novel genes and to determine their function in the context of biology and human disease.
www.neomorphic.com
Mining the human genome to identify novel genes and to determine their function in the context of biology and human disease.
www.neomorphic.com
Neomorphic, Inc.
Provider of genomic research services. Services are provided to pharmaceutical, biotechnology and genomic database companies.
www.neomorphic.com
Provider of genomic research services. Services are provided to pharmaceutical, biotechnology and genomic database companies.
www.neomorphic.com
P
LucID Professional
System that lets you construct and view interactive identification keys to almost anything.
www.publish.csiro.au
System that lets you construct and view interactive identification keys to almost anything.
www.publish.csiro.au
S
Meta-MEME
Software toolkit for building and using motif-based hidden Markov models of DNA and proteins.
metameme.sdsc.edu
Software toolkit for building and using motif-based hidden Markov models of DNA and proteins.
metameme.sdsc.edu
Silicon Genetics
Provider of software solutions for genomic expression analysis experiments.
www.sigenetics.com
Provider of software solutions for genomic expression analysis experiments.
www.sigenetics.com
Brutlag Bioinformatics Group
Located in the Biochemistry Department at Stanford University and is also affiliated with the Stanford Medical Informatics program in the Stanford Medical School.
motif.stanford.edu
Located in the Biochemistry Department at Stanford University and is also affiliated with the Stanford Medical Informatics program in the Stanford Medical School.
motif.stanford.edu
Structural Bioinformatics, Inc.
Provider of pharmaceutical related services. Services are provided to multiple industries.
www.strubix.com
Provider of pharmaceutical related services. Services are provided to multiple industries.
www.strubix.com
T
Bielefeld University Bioinformatics Server
Bioinformatics software laboratory, sequence analysis and distance training.
bibiserv.techfak.uni-bielefeld.de
Bioinformatics software laboratory, sequence analysis and distance training.
bibiserv.techfak.uni-bielefeld.de
Software and Databases on Computational Biology
This page is a supplement to the book Computational Methods in Molecular Biology.
www.tigr.org
This page is a supplement to the book Computational Methods in Molecular Biology.
www.tigr.org
W
Bioinformatics and Biological Computing
genomics and proteomics bioinformatics resources, and services in bioinformatics and biological computing.
bioinfo.weizmann.ac.il
genomics and proteomics bioinformatics resources, and services in bioinformatics and biological computing.
bioinfo.weizmann.ac.il
Genomics Workstation
The Zephyr Genomics Workstation Robust & Simple Soln for DNA & RNA
www.caliperls.com/zephyr_gw
The Zephyr Genomics Workstation Robust & Simple Soln for DNA & RNA
www.caliperls.com/zephyr_gw
Scholarships Available
MS binformatics program (9 months) Georgetown Med Sch Washington DC
Bmcb.Georgetown.Edu/Bioinformatics
MS binformatics program (9 months) Georgetown Med Sch Washington DC
Bmcb.Georgetown.Edu/Bioinformatics
The most common application for bioinformatics software is the sequencing and analysis of DNA. Many software packages are proprietary, however there are some scientists who are developing open source software packages to allow users to customize their own applications. There is some debate over the requirement that software developed as part of federally funded projects be distributed as open source or freely distributed with no source codes.
A range of software packages are available. Some are freeware and others must be purchased. Many of the bioinformatic software programs available for sale offer free trial periods. Be sure to sample a variety of programs before investing in a software package.
The following resources will help you to find the bioinformatics software you need:
1. Utilize free bioinformatics software for basic applications.
2. Purchase a bioinformatic software program for increased functionality.
3. Work with a bioinformatics software provider to create a custom software package.
Action Steps
The best contacts and resources to help you get it done
Get free bioinformatics software applications
If you are looking to learn the basics, download a free bioinformatics software application. These packages range in functionality and may come as individual components.
I recommend: The Bioconductor project is open source and open development. The current 2.2 version allows for the analysis of genomic data. MolSoft provides a free bioinformatic, computational biology and chemistry software tool. Complete the free registration to download the ICM Browser.
Access greater capability with the purchase of bioinformatics software
Purchasing software for biotech will give you a larger range of options than freeware. There are multiple sellers of bioinformatics software in existence today who can help you to get the program you need.
I recommend: DNA Star offers software for bioinformatics for a variety of applications. Request a free fully functional 30-day trial of three of the company's software packages. DNA 2.0 is a seller of bioinformatics software. The company's Gene Designer software is a design tool for molecular biologists and synthetic biologists.
Work with developers to create custom bioinformatics software applications
If suppliers of bioinformatics software do not have what you are looking for, work with a developer to create a custom application. Custom software allows you to get exactly what you need, and can often be integrated with an existing system.
I recommend: Biosof offers a range of customized computational sequence analysis tools. The company also maintains a database of all known antigenic residues and the antibodies that interact with them. NeuroSolutions offers artificial intelligence software for mapping neural networks. The software is customizable and can be integrated into an existing application.
Tips & Tactics
Helpful advice for making the most of this Guide
- • Sequencing DNA using bioinformatics software can require a lot of computer power. Before purchasing a software package, make sure that your system meets the minimum requirements. If it does not, be sure to upgrade your system or the software may not function properly.
