Bioinformatics
MS degree program (9 months) Georgetown Univ., Washington DC
Bmcb.Georgetown.Edu/Bioinformatics
MS degree program (9 months) Georgetown Univ., Washington DC
Bmcb.Georgetown.Edu/Bioinformatics
B
Molecular Database Searching Servers
These resources are for locating molecular sequence data.
megasun.bch.umontreal.ca
These resources are for locating molecular sequence data.
megasun.bch.umontreal.ca
C
DNA Structural Analysis of Complete Genomes and Chromosomes
This list contains complete genomes that are publicaly available from 44 different organisms.
www.cbs.dtu.dk
This list contains complete genomes that are publicaly available from 44 different organisms.
www.cbs.dtu.dk
Cold Spring Harbor Laboratory
Retrieve preliminary sequences from ftp site, and blast search against a database containing clones.
nucleus.cshl.org
Retrieve preliminary sequences from ftp site, and blast search against a database containing clones.
nucleus.cshl.org
D
DNA Databank of Japan
International DNA Databases, including EBI (European Bioinformatics Institute; responsible for the EMBL database) in Europe and NCBI (National Center for Biotechnology Information; responsible for GenBank database) in the USA.
www.ddbj.nig.ac.jp
International DNA Databases, including EBI (European Bioinformatics Institute; responsible for the EMBL database) in Europe and NCBI (National Center for Biotechnology Information; responsible for GenBank database) in the USA.
www.ddbj.nig.ac.jp
G
The Genetic Epidemiology Research Group
Links to databases and genetic tools.
cedar.genetics.soton.ac.uk
Links to databases and genetic tools.
cedar.genetics.soton.ac.uk
Joe Felsenstein Lab
Available web documents include information on the Phylip phylogeny, LAMARC coalescent likelihood package, and European water frogs.
evolution.genetics.washington.edu
Available web documents include information on the Phylip phylogeny, LAMARC coalescent likelihood package, and European water frogs.
evolution.genetics.washington.edu
Complete Genomes
An effort to computerize current knowledge of molecular and cellular biology in terms of the information pathways that consist of interacting molecules or genes and to provide links from the gene catalogs produced by genome sequencing projects.
www.genome.ad.jp
An effort to computerize current knowledge of molecular and cellular biology in terms of the information pathways that consist of interacting molecules or genes and to provide links from the gene catalogs produced by genome sequencing projects.
www.genome.ad.jp
GenomeNet
A Japanese network of database and computational services for genome research and related research areas in molecular and cellular biology.
www.genome.ad.jp
A Japanese network of database and computational services for genome research and related research areas in molecular and cellular biology.
www.genome.ad.jp
The GenomeNet Database Service
Developed for handling existing molecular biology databases and cross-reference links among them, but it is now maintained as a backbone retrieval system for KEGG.
www.genome.ad.jp
Developed for handling existing molecular biology databases and cross-reference links among them, but it is now maintained as a backbone retrieval system for KEGG.
www.genome.ad.jp
University of Oklahoma
As part of the world wide human genome project this site contains methods, protocols and data for our human, mouse, bacterial, and fungal genomic and cDNA sequencing projects.
www.genome.ou.edu
As part of the world wide human genome project this site contains methods, protocols and data for our human, mouse, bacterial, and fungal genomic and cDNA sequencing projects.
www.genome.ou.edu
Genoscope
Using this form, you can check your own individual sequences against those from the Genoscope. The identification is based on the LASSAP implementation of the BLAST 1.4 algorithm.
www.genoscope.cns.fr
Using this form, you can check your own individual sequences against those from the Genoscope. The identification is based on the LASSAP implementation of the BLAST 1.4 algorithm.
www.genoscope.cns.fr
H
Baylor Genome Center
Lists and links to database and search tools on genomics projects.
www.hgsc.bcm.tmc.edu
Lists and links to database and search tools on genomics projects.
www.hgsc.bcm.tmc.edu
HIV Sequence Database
The main aim of this website is to provide easy access to our databases, alignments, and the tools and interfaces we have produced.
www.hiv.lanl.gov
The main aim of this website is to provide easy access to our databases, alignments, and the tools and interfaces we have produced.
www.hiv.lanl.gov
I
Molecular Informatics Resource for the Analysis of Gene Expression
Server dedicated to the methodologies, tools, and technologies relating to information in the study of gene expression.
www.ifti.org
Server dedicated to the methodologies, tools, and technologies relating to information in the study of gene expression.
www.ifti.org
J
INRA Biotechnology Laboratories
Resources include micado database, livestock genome mapping programs, documentation index and list of biological servers.
locus.jouy.inra.fr
Resources include micado database, livestock genome mapping programs, documentation index and list of biological servers.
locus.jouy.inra.fr
K
Codon Usage Database
Sourced by GenBank, provides query box for search with Latin name of organism.
www.kazusa.or.jp
Sourced by GenBank, provides query box for search with Latin name of organism.
www.kazusa.or.jp
L
IMAGE
Public collection of genes, with resources, project information, problematic clone list.
image.llnl.gov
Public collection of genes, with resources, project information, problematic clone list.
image.llnl.gov
M
Cytokine Family cDNA Database
A collection of EST (Expressed Sequence Tag) records of cytokines deposited in the NCBI GenBank. It provides information about the identification of EST records to cytokine members and related data contained in other databases.
cytokine.medic.kumamoto-u.ac.jp
A collection of EST (Expressed Sequence Tag) records of cytokines deposited in the NCBI GenBank. It provides information about the identification of EST records to cytokine members and related data contained in other databases.
cytokine.medic.kumamoto-u.ac.jp
Genetics Web Server
From the Massachusetts General Hospital, Department of Molecular Biology.
weeds.mgh.harvard.edu
From the Massachusetts General Hospital, Department of Molecular Biology.
weeds.mgh.harvard.edu
N
BLAST
NCBI's sequence similarity search tool designed to support analysis of nucleotide and protein databases.
www.ncbi.nlm.nih.gov
NCBI's sequence similarity search tool designed to support analysis of nucleotide and protein databases.
www.ncbi.nlm.nih.gov
GenBank
The NIH genetic sequence database, an annotated collection of all publicly available DNA sequences.
www.ncbi.nlm.nih.gov
The NIH genetic sequence database, an annotated collection of all publicly available DNA sequences.
www.ncbi.nlm.nih.gov
ORF Finder
A graphical analysis tool which finds all open reading frames of a selectable minimum size in a user's sequence or in a sequence already in the database.
www.ncbi.nlm.nih.gov
A graphical analysis tool which finds all open reading frames of a selectable minimum size in a user's sequence or in a sequence already in the database.
www.ncbi.nlm.nih.gov
National Center for Genome Resources
Developer of coordinated methods, such as software tools, to help scientists comprehend biological data.
www.ncgr.org
Developer of coordinated methods, such as software tools, to help scientists comprehend biological data.
www.ncgr.org
GeneCards
Database of human genes, their products and their involvement in diseases, that offers concise information about the functions of all human genes that have an approved symbol.
nciarray.nci.nih.gov
Database of human genes, their products and their involvement in diseases, that offers concise information about the functions of all human genes that have an approved symbol.
nciarray.nci.nih.gov
O
Oxford Polymers
Manufacturer and distributor of polycarbonate nylon and acetyl resin plastics. Distributor of high heat polymer compounds. Products are sold to multiple industries.
www.oxfordpolymers.com
Manufacturer and distributor of polycarbonate nylon and acetyl resin plastics. Distributor of high heat polymer compounds. Products are sold to multiple industries.
www.oxfordpolymers.com
P
Organisms Databases, Genome projects
Query and search tool for genome projects and databases.
www.pasteur.fr
Query and search tool for genome projects and databases.
www.pasteur.fr
R
Completely Sequenced Genomes
Listing of completely sequenced genomes and links to site.
linkage.rockefeller.edu
Listing of completely sequenced genomes and links to site.
linkage.rockefeller.edu
S
Database Search Services
The Sanger Centre provides its own computing resources and database storage for public access by the scientific community.
www.sanger.ac.uk
The Sanger Centre provides its own computing resources and database storage for public access by the scientific community.
www.sanger.ac.uk
The Sanger Centre (UK)
A genome research centre, furthering the knowledge of genomes, particularly through large scale sequencing and analysis.
www.sanger.ac.uk
A genome research centre, furthering the knowledge of genomes, particularly through large scale sequencing and analysis.
www.sanger.ac.uk
T
TIGR Database
A collection of curated databases containing DNA and protein sequence, gene expression, cellular role, protein family, and taxonomic data for microbes, plants and humans.
www.tigr.org
A collection of curated databases containing DNA and protein sequence, gene expression, cellular role, protein family, and taxonomic data for microbes, plants and humans.
www.tigr.org
W
Center for Genome Research at Whitehead Institute (MIT)
Biomedical Research/MIT Center for Genome Research, information on map and sequence releases, software and people at the Genome Center.
www-genome.wi.mit.edu
Biomedical Research/MIT Center for Genome Research, information on map and sequence releases, software and people at the Genome Center.
www-genome.wi.mit.edu
Bioinformatics
MS degree program (9 months) Georgetown Univ., Washington DC
Bmcb.Georgetown.Edu/Bioinformatics
MS degree program (9 months) Georgetown Univ., Washington DC
Bmcb.Georgetown.Edu/Bioinformatics
