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Flagship Merchant Services Review and Pricing

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Written by: Donna Fuscaldo, Senior AnalystUpdated Jun 09, 2025
Shari Weiss,Senior Editor
Business.com earns commissions from some listed providers. Editorial Guidelines.
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Editors Score:7.8/10
Flagship Merchant Services is a full-service credit card processor that offers month-to-month service and a choice of interchange-plus or tiered pricing.
Editor's Rating7.8/10

Flagship Merchant Services is a full-service payment processor that helps businesses cut costs thanks to month-to-month service terms, a variety of pricing models and no early termination fees. Businesses of all types and sizes will benefit from its 20-plus years of experience providing in-person, online and high-quality mobile credit card processing.

Editor’s note: Looking for information on credit card processing? Use the questionnaire below, and our vendor partners will contact you with the information you need: 

Contract

Flagship Merchant Services offers its credit card processing services on a month-to-month basis, allowing you to close your account at any time without incurring a costly termination fee. We love that Flagship Merchant Services:

  • Doesn’t lock you into a three-year contract.
  • Doesn’t force automatic annual renewals.
  • Doesn’t charge early termination fees.

This sets the vendor apart from rival processors. However, you are required to sign a contract if you want free equipment. For instance, if you accept a free Clover Mini credit card processing terminal, you have to commit for three years. We recommend purchasing your equipment so you can keep the more flexible month-to-month service terms.

How to sign up for Flagship Merchant Services

  1. Call a Flagship Merchant Services sales representative and complete the application over the phone.
  2. Request the full contract (the application, the terms and conditions document, and the program guide) before signing the application or providing your Social Security or bank account number.
  3. Read the contract and check the fine print for all fees and terms.
  4. Formally sign up. Be aware that by signing the application, you’re actually signing the contract.
  5. Start processing payments the next day after review and approval.

Look out for the “Additional Services” clause in the application or terms document. Ask your sales rep what these additional services entail, what fees come with them and if you can opt out before signing up. Otherwise, you only have 30 days after setting up your account to opt out.

Pricing and Terms

Flagship Merchant Services offers a choice of interchange-plus or tiered rates. The company doesn’t post its rates or fees on its website, so you’ll need to speak with a sales rep for a customized quote based on your processing volume, industry, and other factors. Flagship will try to meet or beat your current credit card processor pricing if you already have a service provider.

TipBottom line
If the Flagship Merchant Services representative you speak with only gives you tiered rates, don’t be afraid to ask for an interchange-plus rate quote.

Expect these additional costs:

  • Monthly Fee: This fee is for your statement, access to an online analytics tool, 24/7 tech support and a dedicated agent.
  • Monthly Minimum: This is the amount of processing costs (percentage rate plus per-transaction fee) you need to generate each month. If you don’t meet the minimum, you pay a fee to make up the difference. 
  • PCI Compliance Fee: This fee is to help you stay PCI compliant and is charged monthly or annually. If you fail to comply with PCI data security standards or forget to renew your compliance, you may also be charged a PCI noncompliance
  • Chargeback Fee: You’ll only pay this fee if a customer disputes a charge.

Flagship doesn’t charge application or setup fees, and some of the fees listed above may be negotiable.

Flagship advertises a low-rate guarantee and offers an American Express gift card if it can’t give you the lowest terms. You must present a written competing offer, and the fine print notes that additional terms and conditions may apply.

FYIDid you know
There are multiple state and federal payment processing rules and laws that you should keep up with to keep your business PCI compliant and avoid costly legal headaches.

Features

Flagship Merchant Services provides solutions to accept credit card payments across every sales channel.

Accept Credit Cards In-Store

To accept in-person payments, you can use:

Flagship sells Verifone terminals and the popular Clover line of POS systems. Both options let you accept chip cards and mobile wallets such as Apple Pay and Google Pay. 

Accept Credit Cards Online

Flagship sets you up with a payment gateway and an online shopping cart so you can accept payments on your website. You can also set up automatic recurring billing.

Accept Credit Cards on the Go

Accepting payments on a mobile phone is ideal for companies that sell products or services at events or temporary locations and sales teams that work with clients out of the office. A mobile card reader is all it takes.

Accept Credit Cards Over the Phone

Flagship can set you up with a virtual terminal that allows you to process payments via phone by manually keying in credit card details on your computer. The virtual terminal is also useful if you accept orders by mail.

TipBottom line
Digital payment methods are on the rise. When signing up with Flagship Merchant Services, ask about transaction rates for your customers’ preferred payment methods.

Additional Considerations

It’s easy to set up an account with Flagship Merchant Services, which is one of the best merchant services providers. But there are some things to take into account before signing up with this vendor.

  • It will take three to four business days for equipment to arrive after approval.
  • Flagship will deposit money into your account in one to two business days.
  • Same-day funding is available, but it may cost extra.

Limitations

Flagship Merchant Services offers businesses a flexible payment processing solution, but we identified some limitations.

  • Flagship doesn’t post its rates and fees on its website, so you have to call for a quote.
  • You may need to ask for interchange-plus pricing and about the PCI compliance fee.
  • The “Additional Services” clause is vague and you must opt out within 30 days to avoid charges for unwanted services.

FAQs

To cancel merchant services, you’ll have to speak to an account representative. Be aware that many merchant services providers charge hefty early termination fees. We like that Flagship Merchant Services doesn't lock you into long-term contracts or charge you for canceling the service.
Yes, you can negotiate merchant service fees with your payment processor. This is why Flagship Merchant Services' low-rate guarantee is valuable. The vendor is committed to keeping its processing costs affordable and will take into account competitors' rates.
The best merchant service provider depends on your business type, the volume of payments you process and how your customers pay. Flagship Merchant Services is a great choice for businesses looking for flexibility without long-term commitments.
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author image
Written by: Donna Fuscaldo, Senior Analyst
Donna Fuscaldo, who has 25 years of experience navigating the convergence of business, finance, and technology, is a trusted advisor to small business owners. Her expertise in business borrowing, funding, and investment strategies equips her to provide reliable counsel on everything from business loans to accounting and retirement benefits. At business.com, Fuscaldo covers business grants and other financing options, business credit cards and retirement funds. Her analysis has also graced publications like The Wall Street Journal, Dow Jones Newswires, Bankrate, Investopedia, Motley Fool, Fox Business and AARP, solidifying her authority in the field. Beyond her contributions to the financial landscape, Fuscaldo also lends her wisdom on employment matters, with her expertise sought after by platforms like Glassdoor and others. Armed with a bachelor's degree in communication arts and journalism, Fuscaldo has the unique ability to simplify complex business and career-related topics into actionable insights. This makes her a valuable resource for professionals seeking practical solutions in today's dynamic business environment. Armed with a bachelor's degree in communication arts and journalism, Fuscaldo has the unique ability to simplify complex business and career-related topics into actionable insights. This makes her a valuable resource for professionals seeking practical solutions in today's dynamic business environment.
Editor's Rating7.8/10